Yes. You can control auto-updating per plugin via the plugin filter.
I'm using cPanel and auto-updating doesn't work
A few years ago cPanel added a line by default that would disable auto-updating. According to cPanel this can be fixed by removing the line “AUTOMATIC_UPDATER_DISABLED” from your wp-config file.
My theme by Elegant Themes is not updating
For some reason this plugin seems to have trouble with updating themes by Elegant Themes on some installs. I’ve reached out to Elegant Themes and they couldn’t help me. They said that if you’re experiencing problems with it you should contact them and they would help you with it.